General
Filename(s) sub-013_task-Oddball_run-01_eeg.set
MNE object type RawEEGLAB
Measurement date Unknown
Participant sub-013
Experimenter Unknown
Acquisition
Duration 00:07:19 (HH:MM:SS)
Sampling frequency 500.00 Hz
Time points 219,426
Channels
EEG
EOG
Head & sensor digitization 66 points
Filters
Highpass 0.00 Hz
Lowpass 250.00 Hz
Time series
Segment 1 of 5
Time series
Segment 2 of 5
Time series
Segment 3 of 5
Time series
Segment 4 of 5
Time series
Segment 5 of 5
PSD
General
Filename(s) sub-013_task-Oddball_run-01_eeg.set
MNE object type RawEEGLAB
Measurement date Unknown
Participant sub-013
Experimenter Unknown
Acquisition
Duration 00:07:19 (HH:MM:SS)
Sampling frequency 500.00 Hz
Time points 219,426
Channels
EEG
EOG
Head & sensor digitization 66 points
Filters
Highpass 1.00 Hz
Lowpass 120.00 Hz
Time series
Segment 1 of 5
Time series
Segment 2 of 5
Time series
Segment 3 of 5
Time series
Segment 4 of 5
Time series
Segment 5 of 5
PSD
General
MNE object type Epochs
Measurement date Unknown
Participant sub-013
Experimenter Unknown
Acquisition
Total number of events 179
Events counts ODDBALL RARE: 37
ODDBALL STANDARD: 142
Time range -2.000 – 2.000 s
Baseline off
Sampling frequency 500.00 Hz
Time points 2,001
Metadata 179 rows × 7 columns
Channels
EEG
EOG
Head & sensor digitization 66 points
Filters
Highpass 1.00 Hz
Lowpass 120.00 Hz
Projections Average EEG reference (off)
Epoch # event_name ODDBALL DONE ODDBALL RARE ODDBALL STANDARD ODDBALL START STATUS/S 50 STATUS/boundary
2 ODDBALL STANDARD -1.986
3 ODDBALL STANDARD 0.000
4 ODDBALL STANDARD 1.506 -1.948
5 ODDBALL RARE 0.000 -1.506
6 ODDBALL STANDARD -1.850 0.000
7 ODDBALL STANDARD -1.516
8 ODDBALL STANDARD 1.612 0.000
9 ODDBALL RARE 0.000 -1.612
10 ODDBALL STANDARD 0.000
11 ODDBALL STANDARD 0.000
12 ODDBALL STANDARD 0.000
13 ODDBALL STANDARD 0.000
14 ODDBALL STANDARD 0.000
15 ODDBALL RARE 0.000 1.676
16 ODDBALL STANDARD -1.676 0.000
17 ODDBALL STANDARD 0.000
18 ODDBALL RARE 0.000 1.512
19 ODDBALL STANDARD -1.512 0.000
20 ODDBALL STANDARD -1.832
24 ODDBALL RARE 0.000
25 ODDBALL STANDARD 0.000
26 ODDBALL STANDARD -1.686
27 ODDBALL STANDARD 0.000
28 ODDBALL STANDARD 0.000
29 ODDBALL STANDARD -1.590
30 ODDBALL RARE 0.000 1.736
31 ODDBALL STANDARD -1.736 0.000
32 ODDBALL STANDARD -1.662
33 ODDBALL STANDARD -1.496
34 ODDBALL STANDARD 0.000
35 ODDBALL STANDARD -1.760
36 ODDBALL STANDARD 1.622 0.000
37 ODDBALL RARE 0.000 -1.622
38 ODDBALL STANDARD 0.000
39 ODDBALL STANDARD 0.000
40 ODDBALL STANDARD 0.000
41 ODDBALL STANDARD 1.724 -1.622
42 ODDBALL RARE 0.000 -1.724
43 ODDBALL STANDARD -1.626 0.000
44 ODDBALL STANDARD 1.606 0.000
45 ODDBALL RARE 0.000 -1.606
46 ODDBALL STANDARD 0.000
47 ODDBALL STANDARD -1.896
48 ODDBALL STANDARD 0.000
49 ODDBALL STANDARD 0.000
50 ODDBALL STANDARD 1.902 -1.788
51 ODDBALL RARE 0.000 -1.902
52 ODDBALL STANDARD 0.000
53 ODDBALL STANDARD 0.000
54 ODDBALL STANDARD 1.772 -1.746
58 ODDBALL STANDARD -1.960
59 ODDBALL STANDARD -1.728
60 ODDBALL STANDARD 0.000
61 ODDBALL STANDARD 1.794 0.000
62 ODDBALL RARE 0.000 -1.794
63 ODDBALL STANDARD -1.688 0.000
64 ODDBALL STANDARD 1.678 -1.700
65 ODDBALL RARE 0.000 -1.678
66 ODDBALL STANDARD 0.000
67 ODDBALL STANDARD -1.500
68 ODDBALL STANDARD 1.914 0.000
69 ODDBALL RARE 0.000 -1.914
70 ODDBALL STANDARD -1.734 0.000
71 ODDBALL STANDARD 0.000
72 ODDBALL STANDARD -1.736
73 ODDBALL STANDARD 1.870 -1.744
74 ODDBALL RARE 0.000 -1.870
75 ODDBALL STANDARD -1.886 0.000
76 ODDBALL STANDARD 0.000
77 ODDBALL STANDARD -1.730
78 ODDBALL STANDARD 0.000
79 ODDBALL STANDARD -1.584
80 ODDBALL RARE 0.000 1.736
81 ODDBALL STANDARD -1.736 0.000
82 ODDBALL STANDARD 0.000
83 ODDBALL STANDARD 0.000
84 ODDBALL STANDARD -1.698
85 ODDBALL STANDARD -1.552
86 ODDBALL RARE 0.000
87 ODDBALL STANDARD 0.000
88 ODDBALL STANDARD -1.724
89 ODDBALL STANDARD 0.000
90 ODDBALL STANDARD -1.580
91 ODDBALL STANDARD 1.556 0.000
92 ODDBALL RARE 0.000 -1.556
96 ODDBALL STANDARD 1.698 -1.714
97 ODDBALL RARE 0.000 -1.698
98 ODDBALL STANDARD -1.840 0.000
99 ODDBALL STANDARD -1.794
100 ODDBALL STANDARD 0.000
101 ODDBALL STANDARD 1.624 0.000
102 ODDBALL RARE 0.000 -1.624
103 ODDBALL STANDARD -1.818 0.000
104 ODDBALL STANDARD -1.580
105 ODDBALL STANDARD 1.992 0.000
106 ODDBALL RARE 0.000 -1.992
107 ODDBALL STANDARD -1.988 0.000
108 ODDBALL STANDARD -1.640
109 ODDBALL STANDARD -1.946
110 ODDBALL STANDARD -1.608
111 ODDBALL STANDARD -1.892
112 ODDBALL RARE 0.000 1.912
113 ODDBALL STANDARD -1.912 0.000
114 ODDBALL STANDARD -1.642
115 ODDBALL STANDARD 0.000
116 ODDBALL STANDARD 0.000
117 ODDBALL STANDARD 0.000
118 ODDBALL STANDARD 0.000
119 ODDBALL RARE 0.000 1.606
120 ODDBALL STANDARD -1.606 0.000
121 ODDBALL STANDARD -1.740
122 ODDBALL STANDARD 1.504 -1.622
123 ODDBALL RARE 0.000 -1.504
124 ODDBALL STANDARD -1.632 0.000
125 ODDBALL STANDARD -1.536
126 ODDBALL STANDARD -1.606
127 ODDBALL STANDARD 1.550 -1.810
128 ODDBALL RARE 0.000 -1.550
129 ODDBALL STANDARD 0.000
130 ODDBALL STANDARD 0.000
133 ODDBALL RARE 0.000 -1.872
134 ODDBALL STANDARD -1.532 0.000
135 ODDBALL STANDARD 0.000
136 ODDBALL STANDARD 1.810 0.000
137 ODDBALL RARE 0.000 -1.810
138 ODDBALL STANDARD -1.730 0.000
139 ODDBALL STANDARD 0.000
140 ODDBALL RARE 0.000
141 ODDBALL STANDARD 0.000
142 ODDBALL STANDARD 0.000
143 ODDBALL STANDARD 0.000
144 ODDBALL STANDARD 0.000
145 ODDBALL STANDARD 0.000
146 ODDBALL STANDARD 0.000
147 ODDBALL STANDARD 0.000
148 ODDBALL RARE 0.000 1.510
149 ODDBALL STANDARD -1.510 0.000
150 ODDBALL STANDARD 0.000
151 ODDBALL STANDARD -1.744
152 ODDBALL STANDARD -1.778
153 ODDBALL STANDARD -1.654
154 ODDBALL STANDARD -1.704
155 ODDBALL RARE 0.000 1.992
156 ODDBALL STANDARD -1.992 0.000
157 ODDBALL STANDARD -1.900
158 ODDBALL STANDARD -1.956
159 ODDBALL STANDARD -1.768
160 ODDBALL STANDARD 1.674 0.000
161 ODDBALL RARE 0.000 -1.674
165 ODDBALL STANDARD 0.000
166 ODDBALL STANDARD -1.662
167 ODDBALL STANDARD 1.698 -1.552
168 ODDBALL RARE 0.000 -1.698
169 ODDBALL STANDARD 0.000
170 ODDBALL STANDARD 0.000
171 ODDBALL STANDARD -1.818
172 ODDBALL STANDARD 0.000
173 ODDBALL RARE 0.000 1.604
174 ODDBALL STANDARD -1.604 0.000
175 ODDBALL STANDARD -1.768
176 ODDBALL STANDARD -1.872
180 ODDBALL STANDARD -1.722
181 ODDBALL STANDARD 0.000
182 ODDBALL RARE 0.000
185 ODDBALL STANDARD 0.000
186 ODDBALL STANDARD -1.568
187 ODDBALL STANDARD -1.634
188 ODDBALL STANDARD -1.808
189 ODDBALL STANDARD 0.000
190 ODDBALL STANDARD -1.608
191 ODDBALL STANDARD -1.734
192 ODDBALL RARE 0.000 1.596
193 ODDBALL STANDARD -1.596 0.000
194 ODDBALL STANDARD -1.932
195 ODDBALL RARE 0.000
196 ODDBALL STANDARD 0.000
197 ODDBALL STANDARD 1.802 -1.974
198 ODDBALL RARE 0.000 -1.802
199 ODDBALL RARE 0.502 0.000

179 rows × 8 columns

ERP image (EEG)
Drop log
PSD
PSD calculated from 179 epochs (716.0 s).
Autoreject cleaning
Autoreject was run to produce cleaner epochs before fitting ICA. 21 epochs were rejected because more than {'eeg': 8} channels were bad (cross-validated n_interpolate limit; excluding globally bad and non-data channels, shown in white). Note that none of the blue segments were actually interpolated before submitting the data to ICA. This is following the recommended approach for ICA described in the the Autoreject documentation.
Method picard
Fit parameters fastica_it=5
max_iter=500
Fit 75 iterations on epochs (358179 samples)
ICA components 63
Available PCA components 63
Channel types eeg
ICA components marked for exclusion ICA000
ICA001
ICA003
ICA018
Original and cleaned signal
Scores for matching EOG patterns
Original and cleaned EOG epochs
ICA component topographies
ICA component topographies
ICA component topographies
ICA component topographies
ICA component properties
ICA component 0.
ICA component properties
ICA component 1.
ICA component properties
ICA component 2.
ICA component properties
ICA component 3.
ICA component properties
ICA component 4.
ICA component properties
ICA component 5.
ICA component properties
ICA component 6.
ICA component properties
ICA component 7.
ICA component properties
ICA component 8.
ICA component properties
ICA component 9.
ICA component properties
ICA component 10.
ICA component properties
ICA component 11.
ICA component properties
ICA component 12.
ICA component properties
ICA component 13.
ICA component properties
ICA component 14.
ICA component properties
ICA component 15.
ICA component properties
ICA component 16.
ICA component properties
ICA component 17.
ICA component properties
ICA component 18.
ICA component properties
ICA component 19.
ICA component properties
ICA component 20.
ICA component properties
ICA component 21.
ICA component properties
ICA component 22.
ICA component properties
ICA component 23.
ICA component properties
ICA component 24.
ICA component properties
ICA component 25.
ICA component properties
ICA component 26.
ICA component properties
ICA component 27.
ICA component properties
ICA component 28.
ICA component properties
ICA component 29.
ICA component properties
ICA component 30.
ICA component properties
ICA component 31.
ICA component properties
ICA component 32.
ICA component properties
ICA component 33.
ICA component properties
ICA component 34.
ICA component properties
ICA component 35.
ICA component properties
ICA component 36.
ICA component properties
ICA component 37.
ICA component properties
ICA component 38.
ICA component properties
ICA component 39.
ICA component properties
ICA component 40.
ICA component properties
ICA component 41.
ICA component properties
ICA component 42.
ICA component properties
ICA component 43.
ICA component properties
ICA component 44.
ICA component properties
ICA component 45.
ICA component properties
ICA component 46.
ICA component properties
ICA component 47.
ICA component properties
ICA component 48.
ICA component properties
ICA component 49.
ICA component properties
ICA component 50.
ICA component properties
ICA component 51.
ICA component properties
ICA component 52.
ICA component properties
ICA component 53.
ICA component properties
ICA component 54.
ICA component properties
ICA component 55.
ICA component properties
ICA component 56.
ICA component properties
ICA component 57.
ICA component properties
ICA component 58.
ICA component properties
ICA component 59.
ICA component properties
ICA component 60.
ICA component properties
ICA component 61.
ICA component properties
ICA component 62.
Events
General
MNE object type Epochs
Measurement date Unknown
Participant sub-013
Experimenter Unknown
Acquisition
Total number of events 200
Events counts ODDBALL RARE: 40
ODDBALL STANDARD: 160
Time range -2.000 – 2.000 s
Baseline off
Sampling frequency 500.00 Hz
Time points 2,001
Metadata 200 rows × 7 columns
Channels
EEG
EOG
Head & sensor digitization 66 points
Filters
Highpass 1.00 Hz
Lowpass 120.00 Hz
Projections Average EEG reference (off)
Epoch # event_name ODDBALL DONE ODDBALL RARE ODDBALL STANDARD ODDBALL START STATUS/S 50 STATUS/boundary
0 ODDBALL STANDARD 0.000 -0.996
1 ODDBALL STANDARD 0.000
2 ODDBALL STANDARD -1.986
3 ODDBALL STANDARD 0.000
4 ODDBALL STANDARD 1.506 -1.948
5 ODDBALL RARE 0.000 -1.506
6 ODDBALL STANDARD -1.850 0.000
7 ODDBALL STANDARD -1.516
8 ODDBALL STANDARD 1.612 0.000
9 ODDBALL RARE 0.000 -1.612
10 ODDBALL STANDARD 0.000
11 ODDBALL STANDARD 0.000
12 ODDBALL STANDARD 0.000
13 ODDBALL STANDARD 0.000
14 ODDBALL STANDARD 0.000
15 ODDBALL RARE 0.000 1.676
16 ODDBALL STANDARD -1.676 0.000
17 ODDBALL STANDARD 0.000
18 ODDBALL RARE 0.000 1.512
19 ODDBALL STANDARD -1.512 0.000
20 ODDBALL STANDARD -1.832
21 ODDBALL STANDARD 0.000
22 ODDBALL STANDARD -1.514
23 ODDBALL STANDARD -1.968
24 ODDBALL RARE 0.000
25 ODDBALL STANDARD 0.000
26 ODDBALL STANDARD -1.686
27 ODDBALL STANDARD 0.000
28 ODDBALL STANDARD 0.000
29 ODDBALL STANDARD -1.590
30 ODDBALL RARE 0.000 1.736
31 ODDBALL STANDARD -1.736 0.000
32 ODDBALL STANDARD -1.662
33 ODDBALL STANDARD -1.496
34 ODDBALL STANDARD 0.000
35 ODDBALL STANDARD -1.760
36 ODDBALL STANDARD 1.622 0.000
37 ODDBALL RARE 0.000 -1.622
38 ODDBALL STANDARD 0.000
39 ODDBALL STANDARD 0.000
40 ODDBALL STANDARD 0.000
41 ODDBALL STANDARD 1.724 -1.622
42 ODDBALL RARE 0.000 -1.724
43 ODDBALL STANDARD -1.626 0.000
44 ODDBALL STANDARD 1.606 0.000
45 ODDBALL RARE 0.000 -1.606
46 ODDBALL STANDARD 0.000
47 ODDBALL STANDARD -1.896
48 ODDBALL STANDARD 0.000
49 ODDBALL STANDARD 0.000
50 ODDBALL STANDARD 1.902 -1.788
51 ODDBALL RARE 0.000 -1.902
52 ODDBALL STANDARD 0.000
53 ODDBALL STANDARD 0.000
54 ODDBALL STANDARD 1.772 -1.746
55 ODDBALL RARE 0.000 -1.772
56 ODDBALL STANDARD 0.000
57 ODDBALL STANDARD 0.000
58 ODDBALL STANDARD -1.960
59 ODDBALL STANDARD -1.728
60 ODDBALL STANDARD 0.000
61 ODDBALL STANDARD 1.794 0.000
62 ODDBALL RARE 0.000 -1.794
63 ODDBALL STANDARD -1.688 0.000
64 ODDBALL STANDARD 1.678 -1.700
65 ODDBALL RARE 0.000 -1.678
66 ODDBALL STANDARD 0.000
67 ODDBALL STANDARD -1.500
68 ODDBALL STANDARD 1.914 0.000
69 ODDBALL RARE 0.000 -1.914
70 ODDBALL STANDARD -1.734 0.000
71 ODDBALL STANDARD 0.000
72 ODDBALL STANDARD -1.736
73 ODDBALL STANDARD 1.870 -1.744
74 ODDBALL RARE 0.000 -1.870
75 ODDBALL STANDARD -1.886 0.000
76 ODDBALL STANDARD 0.000
77 ODDBALL STANDARD -1.730
78 ODDBALL STANDARD 0.000
79 ODDBALL STANDARD -1.584
80 ODDBALL RARE 0.000 1.736
81 ODDBALL STANDARD -1.736 0.000
82 ODDBALL STANDARD 0.000
83 ODDBALL STANDARD 0.000
84 ODDBALL STANDARD -1.698
85 ODDBALL STANDARD -1.552
86 ODDBALL RARE 0.000
87 ODDBALL STANDARD 0.000
88 ODDBALL STANDARD -1.724
89 ODDBALL STANDARD 0.000
90 ODDBALL STANDARD -1.580
91 ODDBALL STANDARD 1.556 0.000
92 ODDBALL RARE 0.000 -1.556
93 ODDBALL STANDARD 0.000
94 ODDBALL STANDARD -1.688
95 ODDBALL STANDARD 0.000
96 ODDBALL STANDARD 1.698 -1.714
97 ODDBALL RARE 0.000 -1.698
98 ODDBALL STANDARD -1.840 0.000
99 ODDBALL STANDARD -1.794
100 ODDBALL STANDARD 0.000
101 ODDBALL STANDARD 1.624 0.000
102 ODDBALL RARE 0.000 -1.624
103 ODDBALL STANDARD -1.818 0.000
104 ODDBALL STANDARD -1.580
105 ODDBALL STANDARD 1.992 0.000
106 ODDBALL RARE 0.000 -1.992
107 ODDBALL STANDARD -1.988 0.000
108 ODDBALL STANDARD -1.640
109 ODDBALL STANDARD -1.946
110 ODDBALL STANDARD -1.608
111 ODDBALL STANDARD -1.892
112 ODDBALL RARE 0.000 1.912
113 ODDBALL STANDARD -1.912 0.000
114 ODDBALL STANDARD -1.642
115 ODDBALL STANDARD 0.000
116 ODDBALL STANDARD 0.000
117 ODDBALL STANDARD 0.000
118 ODDBALL STANDARD 0.000
119 ODDBALL RARE 0.000 1.606
120 ODDBALL STANDARD -1.606 0.000
121 ODDBALL STANDARD -1.740
122 ODDBALL STANDARD 1.504 -1.622
123 ODDBALL RARE 0.000 -1.504
124 ODDBALL STANDARD -1.632 0.000
125 ODDBALL STANDARD -1.536
126 ODDBALL STANDARD -1.606
127 ODDBALL STANDARD 1.550 -1.810
128 ODDBALL RARE 0.000 -1.550
129 ODDBALL STANDARD 0.000
130 ODDBALL STANDARD 0.000
131 ODDBALL STANDARD 0.000
132 ODDBALL STANDARD 1.872 0.000
133 ODDBALL RARE 0.000 -1.872
134 ODDBALL STANDARD -1.532 0.000
135 ODDBALL STANDARD 0.000
136 ODDBALL STANDARD 1.810 0.000
137 ODDBALL RARE 0.000 -1.810
138 ODDBALL STANDARD -1.730 0.000
139 ODDBALL STANDARD 0.000
140 ODDBALL RARE 0.000
141 ODDBALL STANDARD 0.000
142 ODDBALL STANDARD 0.000
143 ODDBALL STANDARD 0.000
144 ODDBALL STANDARD 0.000
145 ODDBALL STANDARD 0.000
146 ODDBALL STANDARD 0.000
147 ODDBALL STANDARD 0.000
148 ODDBALL RARE 0.000 1.510
149 ODDBALL STANDARD -1.510 0.000
150 ODDBALL STANDARD 0.000
151 ODDBALL STANDARD -1.744
152 ODDBALL STANDARD -1.778
153 ODDBALL STANDARD -1.654
154 ODDBALL STANDARD -1.704
155 ODDBALL RARE 0.000 1.992
156 ODDBALL STANDARD -1.992 0.000
157 ODDBALL STANDARD -1.900
158 ODDBALL STANDARD -1.956
159 ODDBALL STANDARD -1.768
160 ODDBALL STANDARD 1.674 0.000
161 ODDBALL RARE 0.000 -1.674
162 ODDBALL STANDARD -1.694 0.000
163 ODDBALL STANDARD -1.806
164 ODDBALL RARE 0.000
165 ODDBALL STANDARD 0.000
166 ODDBALL STANDARD -1.662
167 ODDBALL STANDARD 1.698 -1.552
168 ODDBALL RARE 0.000 -1.698
169 ODDBALL STANDARD 0.000
170 ODDBALL STANDARD 0.000
171 ODDBALL STANDARD -1.818
172 ODDBALL STANDARD 0.000
173 ODDBALL RARE 0.000 1.604
174 ODDBALL STANDARD -1.604 0.000
175 ODDBALL STANDARD -1.768
176 ODDBALL STANDARD -1.872
177 ODDBALL STANDARD 1.720 0.000
178 ODDBALL RARE 0.000 -1.720
179 ODDBALL STANDARD -1.810 0.000
180 ODDBALL STANDARD -1.722
181 ODDBALL STANDARD 0.000
182 ODDBALL RARE 0.000
183 ODDBALL STANDARD 0.000
184 ODDBALL STANDARD -1.978
185 ODDBALL STANDARD 0.000
186 ODDBALL STANDARD -1.568
187 ODDBALL STANDARD -1.634
188 ODDBALL STANDARD -1.808
189 ODDBALL STANDARD 0.000
190 ODDBALL STANDARD -1.608
191 ODDBALL STANDARD -1.734
192 ODDBALL RARE 0.000 1.596
193 ODDBALL STANDARD -1.596 0.000
194 ODDBALL STANDARD -1.932
195 ODDBALL RARE 0.000
196 ODDBALL STANDARD 0.000
197 ODDBALL STANDARD 1.802 -1.974
198 ODDBALL RARE 0.000 -1.802
199 ODDBALL RARE 0.502 0.000

200 rows × 8 columns

ERP image (EEG)
No epochs exceeded the rejection thresholds. Nothing was dropped.
PSD
PSD calculated from 8 epochs (32.0 s).
Method picard
Fit parameters fastica_it=5
max_iter=500
Fit 75 iterations on epochs (358179 samples)
ICA components 63
Available PCA components 63
Channel types eeg
ICA components marked for exclusion ICA000
ICA001
ICA003
ICA018
Original and cleaned signal
ICA component topographies
ICA component properties
ICA component 0.
ICA component properties
ICA component 1.
ICA component properties
ICA component 3.
ICA component properties
ICA component 18.
General
Filename(s) sub-013_task-Oddball_run-01_proc-filt_raw.fif
MNE object type Raw
Measurement date Unknown
Participant sub-013
Experimenter Unknown
Acquisition
Duration 00:07:19 (HH:MM:SS)
Sampling frequency 500.00 Hz
Time points 219,426
Channels
EEG
EOG
Head & sensor digitization 66 points
Filters
Highpass 1.00 Hz
Lowpass 120.00 Hz
Time series
Segment 1 of 5
Time series
Segment 2 of 5
Time series
Segment 3 of 5
Time series
Segment 4 of 5
Time series
Segment 5 of 5
PSD
autoreject_local cleaning
Autoreject was run to produce cleaner epochs. 17 epochs were rejected because more than {'eeg': 16} channels were bad (cross-validated n_interpolate limit; excluding globally bad and non-data channels, shown in white).
General
Filename(s) sub-013_task-Oddball_proc-ica_epo.fif
MNE object type EpochsFIF
Measurement date Unknown
Participant sub-013
Experimenter Unknown
Acquisition
Total number of events 183
Events counts ODDBALL RARE: 37
ODDBALL STANDARD: 146
Time range -2.000 – 2.000 s
Baseline -0.200 – 0.000 s
Sampling frequency 500.00 Hz
Time points 2,001
Metadata 183 rows × 7 columns
Channels
EEG
EOG
Head & sensor digitization 66 points
Filters
Highpass 1.00 Hz
Lowpass 120.00 Hz
Projections Average EEG reference (on)
Epoch # event_name ODDBALL DONE ODDBALL RARE ODDBALL STANDARD ODDBALL START STATUS/S 50 STATUS/boundary
1 ODDBALL STANDARD 0.000 None None
2 ODDBALL STANDARD -1.986 None None
3 ODDBALL STANDARD 0.000 None None
4 ODDBALL STANDARD 1.506 -1.948 None None
5 ODDBALL RARE 0.000 -1.506 None None
6 ODDBALL STANDARD -1.850 0.000 None None
7 ODDBALL STANDARD -1.516 None None
8 ODDBALL STANDARD 1.612 0.000 None None
9 ODDBALL RARE 0.000 -1.612 None None
10 ODDBALL STANDARD 0.000 None None
11 ODDBALL STANDARD 0.000 None None
12 ODDBALL STANDARD 0.000 None None
13 ODDBALL STANDARD 0.000 None None
14 ODDBALL STANDARD 0.000 None None
15 ODDBALL RARE 0.000 1.676 None None
16 ODDBALL STANDARD -1.676 0.000 None None
17 ODDBALL STANDARD 0.000 None None
18 ODDBALL RARE 0.000 1.512 None None
19 ODDBALL STANDARD -1.512 0.000 None None
20 ODDBALL STANDARD -1.832 None None
24 ODDBALL RARE 0.000 None None
25 ODDBALL STANDARD 0.000 None None
26 ODDBALL STANDARD -1.686 None None
27 ODDBALL STANDARD 0.000 None None
28 ODDBALL STANDARD 0.000 None None
29 ODDBALL STANDARD -1.590 None None
30 ODDBALL RARE 0.000 1.736 None None
31 ODDBALL STANDARD -1.736 0.000 None None
32 ODDBALL STANDARD -1.662 None None
33 ODDBALL STANDARD -1.496 None None
34 ODDBALL STANDARD 0.000 None None
35 ODDBALL STANDARD -1.760 None None
36 ODDBALL STANDARD 1.622 0.000 None None
37 ODDBALL RARE 0.000 -1.622 None None
38 ODDBALL STANDARD 0.000 None None
39 ODDBALL STANDARD 0.000 None None
40 ODDBALL STANDARD 0.000 None None
41 ODDBALL STANDARD 1.724 -1.622 None None
42 ODDBALL RARE 0.000 -1.724 None None
43 ODDBALL STANDARD -1.626 0.000 None None
44 ODDBALL STANDARD 1.606 0.000 None None
45 ODDBALL RARE 0.000 -1.606 None None
46 ODDBALL STANDARD 0.000 None None
47 ODDBALL STANDARD -1.896 None None
48 ODDBALL STANDARD 0.000 None None
49 ODDBALL STANDARD 0.000 None None
50 ODDBALL STANDARD 1.902 -1.788 None None
51 ODDBALL RARE 0.000 -1.902 None None
52 ODDBALL STANDARD 0.000 None None
53 ODDBALL STANDARD 0.000 None None
54 ODDBALL STANDARD 1.772 -1.746 None None
58 ODDBALL STANDARD -1.960 None None
59 ODDBALL STANDARD -1.728 None None
60 ODDBALL STANDARD 0.000 None None
61 ODDBALL STANDARD 1.794 0.000 None None
62 ODDBALL RARE 0.000 -1.794 None None
63 ODDBALL STANDARD -1.688 0.000 None None
64 ODDBALL STANDARD 1.678 -1.700 None None
65 ODDBALL RARE 0.000 -1.678 None None
66 ODDBALL STANDARD 0.000 None None
67 ODDBALL STANDARD -1.500 None None
68 ODDBALL STANDARD 1.914 0.000 None None
69 ODDBALL RARE 0.000 -1.914 None None
70 ODDBALL STANDARD -1.734 0.000 None None
71 ODDBALL STANDARD 0.000 None None
72 ODDBALL STANDARD -1.736 None None
73 ODDBALL STANDARD 1.870 -1.744 None None
74 ODDBALL RARE 0.000 -1.870 None None
75 ODDBALL STANDARD -1.886 0.000 None None
76 ODDBALL STANDARD 0.000 None None
77 ODDBALL STANDARD -1.730 None None
78 ODDBALL STANDARD 0.000 None None
79 ODDBALL STANDARD -1.584 None None
80 ODDBALL RARE 0.000 1.736 None None
81 ODDBALL STANDARD -1.736 0.000 None None
82 ODDBALL STANDARD 0.000 None None
83 ODDBALL STANDARD 0.000 None None
84 ODDBALL STANDARD -1.698 None None
85 ODDBALL STANDARD -1.552 None None
86 ODDBALL RARE 0.000 None None
87 ODDBALL STANDARD 0.000 None None
88 ODDBALL STANDARD -1.724 None None
89 ODDBALL STANDARD 0.000 None None
90 ODDBALL STANDARD -1.580 None None
91 ODDBALL STANDARD 1.556 0.000 None None
92 ODDBALL RARE 0.000 -1.556 None None
95 ODDBALL STANDARD 0.000 None None
96 ODDBALL STANDARD 1.698 -1.714 None None
97 ODDBALL RARE 0.000 -1.698 None None
98 ODDBALL STANDARD -1.840 0.000 None None
99 ODDBALL STANDARD -1.794 None None
100 ODDBALL STANDARD 0.000 None None
101 ODDBALL STANDARD 1.624 0.000 None None
102 ODDBALL RARE 0.000 -1.624 None None
103 ODDBALL STANDARD -1.818 0.000 None None
104 ODDBALL STANDARD -1.580 None None
105 ODDBALL STANDARD 1.992 0.000 None None
106 ODDBALL RARE 0.000 -1.992 None None
107 ODDBALL STANDARD -1.988 0.000 None None
108 ODDBALL STANDARD -1.640 None None
109 ODDBALL STANDARD -1.946 None None
110 ODDBALL STANDARD -1.608 None None
111 ODDBALL STANDARD -1.892 None None
112 ODDBALL RARE 0.000 1.912 None None
113 ODDBALL STANDARD -1.912 0.000 None None
114 ODDBALL STANDARD -1.642 None None
115 ODDBALL STANDARD 0.000 None None
116 ODDBALL STANDARD 0.000 None None
117 ODDBALL STANDARD 0.000 None None
118 ODDBALL STANDARD 0.000 None None
119 ODDBALL RARE 0.000 1.606 None None
120 ODDBALL STANDARD -1.606 0.000 None None
121 ODDBALL STANDARD -1.740 None None
122 ODDBALL STANDARD 1.504 -1.622 None None
123 ODDBALL RARE 0.000 -1.504 None None
124 ODDBALL STANDARD -1.632 0.000 None None
125 ODDBALL STANDARD -1.536 None None
126 ODDBALL STANDARD -1.606 None None
127 ODDBALL STANDARD 1.550 -1.810 None None
128 ODDBALL RARE 0.000 -1.550 None None
129 ODDBALL STANDARD 0.000 None None
130 ODDBALL STANDARD 0.000 None None
131 ODDBALL STANDARD 0.000 None None
132 ODDBALL STANDARD 1.872 0.000 None None
133 ODDBALL RARE 0.000 -1.872 None None
134 ODDBALL STANDARD -1.532 0.000 None None
135 ODDBALL STANDARD 0.000 None None
136 ODDBALL STANDARD 1.810 0.000 None None
137 ODDBALL RARE 0.000 -1.810 None None
138 ODDBALL STANDARD -1.730 0.000 None None
139 ODDBALL STANDARD 0.000 None None
140 ODDBALL RARE 0.000 None None
141 ODDBALL STANDARD 0.000 None None
142 ODDBALL STANDARD 0.000 None None
143 ODDBALL STANDARD 0.000 None None
144 ODDBALL STANDARD 0.000 None None
145 ODDBALL STANDARD 0.000 None None
146 ODDBALL STANDARD 0.000 None None
147 ODDBALL STANDARD 0.000 None None
148 ODDBALL RARE 0.000 1.510 None None
149 ODDBALL STANDARD -1.510 0.000 None None
150 ODDBALL STANDARD 0.000 None None
151 ODDBALL STANDARD -1.744 None None
152 ODDBALL STANDARD -1.778 None None
153 ODDBALL STANDARD -1.654 None None
154 ODDBALL STANDARD -1.704 None None
155 ODDBALL RARE 0.000 1.992 None None
156 ODDBALL STANDARD -1.992 0.000 None None
157 ODDBALL STANDARD -1.900 None None
158 ODDBALL STANDARD -1.956 None None
159 ODDBALL STANDARD -1.768 None None
160 ODDBALL STANDARD 1.674 0.000 None None
161 ODDBALL RARE 0.000 -1.674 None None
165 ODDBALL STANDARD 0.000 None None
166 ODDBALL STANDARD -1.662 None None
167 ODDBALL STANDARD 1.698 -1.552 None None
168 ODDBALL RARE 0.000 -1.698 None None
169 ODDBALL STANDARD 0.000 None None
170 ODDBALL STANDARD 0.000 None None
171 ODDBALL STANDARD -1.818 None None
172 ODDBALL STANDARD 0.000 None None
173 ODDBALL RARE 0.000 1.604 None None
174 ODDBALL STANDARD -1.604 0.000 None None
175 ODDBALL STANDARD -1.768 None None
176 ODDBALL STANDARD -1.872 None None
180 ODDBALL STANDARD -1.722 None None
181 ODDBALL STANDARD 0.000 None None
182 ODDBALL RARE 0.000 None None
185 ODDBALL STANDARD 0.000 None None
186 ODDBALL STANDARD -1.568 None None
187 ODDBALL STANDARD -1.634 None None
188 ODDBALL STANDARD -1.808 None None
189 ODDBALL STANDARD 0.000 None None
190 ODDBALL STANDARD -1.608 None None
191 ODDBALL STANDARD -1.734 None None
192 ODDBALL RARE 0.000 1.596 None None
193 ODDBALL STANDARD -1.596 0.000 None None
194 ODDBALL STANDARD -1.932 None None
195 ODDBALL RARE 0.000 None None
196 ODDBALL STANDARD 0.000 None None
197 ODDBALL STANDARD 1.802 -1.974 None None
198 ODDBALL RARE 0.000 -1.802 None None
199 ODDBALL RARE 0.502 0.000 None None

183 rows × 8 columns

ERP image (EEG)
Drop log
PSD
PSD calculated from 8 epochs (32.0 s).
General
MNE object type EvokedArray
Measurement date Unknown
Participant sub-013
Experimenter Unknown
Acquisition
Aggregation average of 146 epochs
Condition ODDBALL STANDARD
Time range -2.000 – 2.000 s
Baseline -0.200 – 0.000 s
Sampling frequency 500.00 Hz
Time points 2,001
Channels
EEG
Head & sensor digitization 66 points
Filters
Highpass 1.00 Hz
Lowpass 120.00 Hz
Projections Average EEG reference (on)
Time course (EEG)
Topographies
Time point: -2.000 s
Topographies
Time point: -1.800 s
Topographies
Time point: -1.600 s
Topographies
Time point: -1.400 s
Topographies
Time point: -1.200 s
Topographies
Time point: -1.000 s
Topographies
Time point: -0.800 s
Topographies
Time point: -0.600 s
Topographies
Time point: -0.400 s
Topographies
Time point: -0.200 s
Topographies
Time point: 0.000 s
Topographies
Time point: 0.200 s
Topographies
Time point: 0.400 s
Topographies
Time point: 0.600 s
Topographies
Time point: 0.800 s
Topographies
Time point: 1.000 s
Topographies
Time point: 1.200 s
Topographies
Time point: 1.400 s
Topographies
Time point: 1.600 s
Topographies
Time point: 1.800 s
Topographies
Time point: 2.000 s
Global field power
General
MNE object type EvokedArray
Measurement date Unknown
Participant sub-013
Experimenter Unknown
Acquisition
Aggregation average of 37 epochs
Condition ODDBALL RARE
Time range -2.000 – 2.000 s
Baseline -0.200 – 0.000 s
Sampling frequency 500.00 Hz
Time points 2,001
Channels
EEG
Head & sensor digitization 66 points
Filters
Highpass 1.00 Hz
Lowpass 120.00 Hz
Projections Average EEG reference (on)
Time course (EEG)
Topographies
Time point: -2.000 s
Topographies
Time point: -1.800 s
Topographies
Time point: -1.600 s
Topographies
Time point: -1.400 s
Topographies
Time point: -1.200 s
Topographies
Time point: -1.000 s
Topographies
Time point: -0.800 s
Topographies
Time point: -0.600 s
Topographies
Time point: -0.400 s
Topographies
Time point: -0.200 s
Topographies
Time point: 0.000 s
Topographies
Time point: 0.200 s
Topographies
Time point: 0.400 s
Topographies
Time point: 0.600 s
Topographies
Time point: 0.800 s
Topographies
Time point: 1.000 s
Topographies
Time point: 1.200 s
Topographies
Time point: 1.400 s
Topographies
Time point: 1.600 s
Topographies
Time point: 1.800 s
Topographies
Time point: 2.000 s
Global field power
TFR Power: ODDBALL STANDARD
TFR Power: ODDBALL STANDARD
TFR ITC: ODDBALL STANDARD
TFR Inter-Trial Coherence: ODDBALL STANDARD
TFR Power: ODDBALL RARE
TFR Power: ODDBALL RARE
TFR ITC: ODDBALL RARE
TFR Inter-Trial Coherence: ODDBALL RARE
Covariance matrix
Singular values
Whitening: ODDBALL STANDARD
Whitening: ODDBALL RARE 
  # Default settings for data processing and analysis.

from collections.abc import Callable, Sequence
import sys
from typing import Annotated, Any, Literal

from annotated_types import Ge, Interval, Len, MinLen
from mne import Covariance
from mne_bids import BIDSPath

from mne_bids_pipeline.typing import (
     ArbitraryContrast,
     DigMontageType,
     FloatArrayLike,
     PathLike,
 )

import argparse

import numpy as np

bids_root = "./data_split/"

interactive = False


args = [arg for arg in sys.argv if arg.startswith("--task") or not arg.startswith("-")]
parser = argparse.ArgumentParser()
parser.add_argument("ignored", nargs="*")
parser.add_argument(
    "--task", choices=("Gambling","Oddball","Axon"), required=True
)
task = parser.parse_args(args).task 
sessions = "all"

runs = "all" # Always 01 anyway
#crop_runs: tuple[float, float] | None = None
subjects = "all"

ch_types = ["eeg"] # not considering eog channels 
data_type = "eeg" # redundant


eog_channels = None # has to be none, because we have actual EOG channels

eeg_reference = "average" # default setting

#TODO check if this actually applies montage
eeg_template_montage = None # custom montage

#drop_channels: Sequence[str] = []

# Read full_config.py for more context
# Might make sense to restrict this?
analyze_channels = "ch_types"


read_raw_bids_verbose = 'error' # Don't log everyting, since files are not perfectly BIDS compliant

#FFT Power spectrum
plot_psd_for_runs = "all" # Default value



######################### Preprocessing #########################


# Read full_config.py for more context
# Paper doesn't mention breaks, but could have still happened since gameplay was quite long
find_breaks: bool = True # Default is false

min_break_duration: float = 15.0 # Default value

# Makes sense, also considering our epoching
t_break_annot_start_after_previous_event: float = 5.0 # Default value
t_break_annot_stop_before_next_event: float = 5.0 # Default value




# ## Bad channel detection
#
# Read full_config.py for context of the used algorithm

# Original paper simply removed most ventral electrodes (leaving 60).
# Is there something like this for eeg channels?
#find_flat_channels_meg: bool = True # Default is False
#find_noisy_channels_meg: bool = True # Default is False


# %%
# ## Maxwell filter

# Read full_config.py for context
# Might make sense to enable? There are many parameters than can be set
# Chose to keep disabled since it doesn't seem to be common? (esp. for EEG data)
# According to the samples: https://mne.tools/mne-bids-pipeline/stable/examples/examples.html
# use_maxwell_filter: bool = False
# mf_st_duration: float | None = None


# ## Filtering & resampling

# ### Filtering
#
# Read full_config.py for context (!!!)
# mne-bids-pipeline does not allow ICA if l_freq is below 1 Hz!! See ica_l_freq in full_config.py
l_freq: float | None = 1 # Paper uses 0.1 Hz, full_config.py recommends 1 Hz
h_freq: float | None = 120 # Paper uses 20 Hz, full_config.py recommends 40 or 120 depending on type of analysis

#TODO Why does this default to None? See if powerline noise is filtered elsewhere
notch_freq: float | Sequence[float] | None = 60 # Default is None
# notch_trans_bandwidth: float = 1.0



# ### Resampling
#
# Not necessary since already 500Hz
# raw_resample_sfreq: float | None = None


# ## Epoching

# Could be useful if event names are not as desired
# rename_events: dict = dict()
# on_rename_missing_events: Literal["ignore", "warn", "raise"] = "raise"

# TODO TODO TODO TODO

#1) missile launch button press (SHOOT_BUTTON)
#2) collect star (COLLECT_STAR)
#3) collect ammo box (COLLECT_AMMO)
#4) crash into wall (PLAYER_CRASH_WALL)
#5) crash into enemy (PLAYER_CRASH_ENEMY)
#6) missile hit enemy (MISSILE_HIT_ENEMY)

"""
The paper describes issues with the "PLAYER_CRASH_WALL" and "COLLECT_STAR" events often occuring in rapid succession, where only the first one is kept.
The filtering has already been done in step 01, and the offending events are now marked as "IGNORE PLAYER_CRASH_WALL" and "IGNORE COLLECT_STAR"
"""

conditions = []

if(task == "Gambling"): #"Wins and losses" Exemplar events
    conditions = ["GAMBLING LOSS", "GAMBLING WIN"]
elif(task == "Oddball"): #"Target detection" Exemplar events
    conditions = ["ODDBALL STANDARD", "ODDBALL RARE"]
elif(task == "Axon"):
    #There are also "GAME OVER" and "GAME START", but they occur only once (?)
    conditions = ["SHOOT_BUTTON", "MISSILE_HIT_ENEMY", "COLLECT_STAR", "COLLECT_AMMO", "PLAYER_CRASH_ENEMY", "PLAYER_CRASH_WALL"]

#TODO Check whether these epoch timings from the paper make sense. They seem unusually long?
epochs_tmin: float = -2
epochs_tmax: float = 2

#Also from the paper
baseline: tuple[float | None, float | None] | None = (-0.2, 0)


# ## Artifact removal

# ### SSP, ICA, and artifact regression

#TODO check if this performs the intended behavior (removing eye artifacts from eeg by using the eog channels)
# For some reason, this throws an error :(
#regress_artifact = {
#    "picks": "eeg", 
#    "picks_artifact": ["HEOG", "VEOG"]
#}

#TODO maybe SSP could make sense too?
# For SSP there are some more variables aswell
spatial_filter: Literal["ssp", "ica"] | None = "ica"
# """
# !!! warning "ICA requires manual intervention!"
#     After the automatic ICA component detection step, review each subject's
#     `*_report.html` report file check if the set of ICA components to be removed
#     is correct. Adjustments should be made to the `*_proc-ica_components.tsv`
#     file, which will then be used in the step that is applied during ICA.

#     ICA component order can be considered arbitrary, so any time the ICA is
#     re-fit – i.e., if you change any parameters that affect steps prior to
#     ICA fitting – this file will need to be updated!
# """

#TODO check percentage of rejected epochs. Paper states 3.27%
ica_reject: dict[str, float] | Literal["autoreject_local"] | None = "autoreject_local"


# Can go as high as 3000 for convergence
# ica_max_iterations: int = 500

# Read full_config.py for context
# None == 0.9999 might be optimal if only artifact removal is of interest
# ica_n_components: float | int | None = None


#TODO Browse raw data to find actual eog and ecg thresholds
#Read full_config.py for tips on how to do this
# ica_ecg_threshold: float = 0.1
# """
# The cross-trial phase statistics (CTPS) threshold parameter used for detecting
# ECG-related ICs.
# """

# ica_eog_threshold: float = 3.0
# """
# The threshold to use during automated EOG classification. Lower values mean
# that more ICs will be identified as EOG-related. If too low, the
# false-alarm rate increases dramatically.
# """

#For rejection after ICA
#Probably makes the most sense for data with moderate amounts of artifacts
reject: dict[str, float] | Literal["autoreject_global", "autoreject_local"] | None = "autoreject_local"#(
#     None
# )


# In the paper a median of 2 electrodes (range 1 to 3) was interpolated, so add these values
autoreject_n_interpolate: FloatArrayLike = [1,2,3, 4, 8, 16] # Default [4, 8, 16]
# """
# The maximum number of bad channels in an epoch that `autoreject` local will try to
# interpolate. The optimal number among this list will be estimated using a
# cross-validation procedure; this means that the more elements are provided here, the
# longer the `autoreject` run will take. If the number of bad channels in an epoch
# exceeds this value, the channels won't be interpolated and the epoch will be dropped.

# Read full_config.py for more context
# Has many more parameters
decode = False # Default is True

# ## Time-frequency analysis

# Just put in all events for now (?)
time_frequency_conditions: Sequence[str] = conditions

#TODO look at the data to find optimal values
# time_frequency_freq_min: float | None = 8
# time_frequency_freq_max: float | None = 40

time_frequency_freq_min = 1  # minimum frequency in Hz
time_frequency_freq_max = 50  # maximum frequency in Hz
#1 to 50 Hz in 49 logarithmically spaced steps
frequencies = np.logspace(np.log10(time_frequency_freq_min), np.log10(time_frequency_freq_max), 49)

# sigma
time_frequency_cycles = 4 / (2 * np.pi * frequencies)

# time_frequency_subtract_evoked: bool = False

time_frequency_baseline: tuple[float, float] | None = (-0.3, -0.2)
time_frequency_baseline_mode: str = "logratio" # Default is "mean"
time_frequency_crop: dict | None = dict(tmin=-0.5, tmax=1, fmin=1, fmax=50) # Default in None



n_jobs: int = 12
# """
# Specifies how many subjects you want to process in parallel. If `1`, disables
# parallel processing.
# """


  Platform             Linux-6.5.0-44-generic-x86_64-with-glibc2.38
Python               3.11.6 (main, Apr 10 2024, 17:26:07) [GCC 13.2.0]
Executable           /home/okk/.local/bin/python3.11
CPU                  x86_64 (12 cores)
Memory               62.7 GB

Core
├☑ mne               1.8.0 (latest release)
├☑ numpy             1.26.4 (OpenBLAS 0.3.23.dev with 1 thread)
├☑ scipy             1.12.0
└☑ matplotlib        3.8.2 (backend=agg)

Numerical (optional)
├☑ sklearn           1.3.2
├☑ numba             0.58.1
├☑ nibabel           5.3.2
├☑ pandas            1.5.3
├☑ h5io              0.2.4
├☑ h5py              3.10.0
└☐ unavailable       nilearn, dipy, openmeeg, cupy

Visualization (optional)
├☑ pyvista           0.44.2 (OpenGL 4.5.0 NVIDIA 535.171.04 via NVIDIA GeForce GTX 1060 6GB/PCIe/SSE2)
├☑ pyvistaqt         0.11.1
├☑ vtk               9.3.1
├☑ qtpy              2.4.2 (PyQt5=5.15.14)
├☑ pyqtgraph         0.13.7
└☐ unavailable       ipympl, mne-qt-browser, ipywidgets, trame_client, trame_server, trame_vtk, trame_vuetify

Ecosystem (optional)
├☑ mne-bids          0.16.0
├☑ mne-bids-pipeline 1.9.0
├☑ eeglabio          0.0.3
├☑ edfio             0.4.5
├☑ pybv              0.7.6
└☐ unavailable       mne-nirs, mne-features, mne-connectivity, mne-icalabel, neo, mffpy